LOLA - Locus overlap analysis for enrichment of genomic ranges
Provides functions for testing overlap of sets of genomic regions with public and custom region set (genomic ranges) databases. This makes it possible to do automated enrichment analysis for genomic region sets, thus facilitating interpretation of functional genomics and epigenomics data.
Last updated 24 days ago
genesetenrichmentgeneregulationgenomeannotationsystemsbiologyfunctionalgenomicschipseqmethylseqsequencing
9.33 score 71 stars 167 scripts 424 downloadssimpleCache - Simply Caching R Objects
Provides intuitive functions for caching R objects, encouraging reproducible, restartable, and distributed R analysis. The user selects a location to store caches, and then provides nothing more than a cache name and instructions (R code) for how to produce the R object. Also provides some advanced options like environment assignments, recreating or reloading caches, and cluster compute bindings (using the 'batchtools' package) making it flexible enough for use in large-scale data analysis projects.
Last updated 4 years ago
7.50 score 34 stars 1 packages 69 scripts 218 downloadspepr - Reading Portable Encapsulated Projects
A PEP, or Portable Encapsulated Project, is a dataset that subscribes to the PEP structure for organizing metadata. It is written using a simple YAML + CSV format, it is your one-stop solution to metadata management across data analysis environments. This package reads this standardized project configuration structure into R. Described in Sheffield et al. (2021) <doi:10.1093/gigascience/giab077>.
Last updated 1 years ago
bioinformaticsmetadata
6.05 score 4 stars 20 scripts 245 downloads